miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|193274283|gb|FE197985.1|FE197985 CAACAACAAAAAGAAAAGCCCTGGCAGTGGCTTCCCTCTGTCCAGCCAAGTTCCAGATGTGATGGTGGTGGGAGAGCCCA
CGCTGATGGGAGGGGAGTTTGGCGACGAGGACGAGCGCCTGATCACGCGGCTGGAGAACACGCAGTTCGACGCGGCCAAC
GGCATCGACGACGAGGACAGCTTCAACAACTCCCCGGCGCTGGGCTCCAACTCGCCCTGGAACAACAAGGCCCCCTCCAG
CCAGGAGAGCAAGAGCGACAACCCCACCTCACAGGCATCGCAGTAGAGCCCCGCCATCTCAACACAAACCCCCTCTCTGC
CACTCCTCAGACCCCCCATCCCTACCCCGACAGCCACGAGTGCAACAGCAGCAACCCAGACATCACTGTAGAGCTCAGAG
TCATCACACACACGGGCCCGAGGGGGCTTGGCATGTCTCAGGCAACGTCACTGAGCCAATGCTGTGACTCCCCCATATTT
AACCACTGTGTCTCCCCTCTTTCTCCCTTTTCCTCGTCGCAAATGTCCCGTCAGAGATCGGGTGGATGTGACCGAGGAGG
CGCAAGGAATTTAATCCAGGGGAGAACTGTGCACACTAAACCATCCGTACTGAATAAACATGTAGGGCCCGGGGTGGAGG
GGATGGTGTCAGCGAGGCCACAACATGGTGGCGAGTTGCTTAGGGACCACTTGTCCACCCGTCACCCAAAACATGCCTCT
CAATTCTGGTCTGCTCCGTCGACGCACAAGCCACTGGTAACGTTTGTTAATAGAGTATGTGTGTGTGTGTGTCCATGTGC
ATCACCTCTTGTATCGAACCTGAGGGGAAGCGGATCA




Most similar to sp|P70060|LDB1_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis
           GN=ldb1 PE=1 SV=2
          Length = 375

 Score =  177 bits (448), Expect = 1e-43
 Identities = 86/94 (91%), Positives = 90/94 (95%)
 Frame = +2

Query: 2   NNKKKSPGSGFPLSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDS 181
           N+KKKSP S F LSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDS
Sbjct: 282 NSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDS 341

Query: 182 FNNSPALGSNSPWNNKAPSSQESKSDNPTSQASQ 283
           FNNSPALG+NSPWN+K PSSQESKS+NPTSQASQ
Sbjct: 342 FNNSPALGANSPWNSKPPSSQESKSENPTSQASQ 375